STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A316TZW3DNA repair protein rad10. (195 aa)    
Predicted Functional Partners:
A0A316U2Q6
ERCC4 domain-containing protein.
   
 0.997
A0A316U5T8
DNA repair protein.
    
 0.975
A0A316UAB0
Uncharacterized protein.
   
 0.970
A0A316UDT7
NPL4-domain-containing protein.
    
 0.938
A0A316UFW2
Putative DED81-asparaginyl-tRNA-synthetase.
   
 0.935
A0A316ULL4
P-loop containing nucleoside triphosphate hydrolase protein.
    
 0.932
A0A316UJG9
Putative NTF2-nuclear transport factor.
   
 0.927
A0A316U037
PIN domain-like protein.
    
 0.866
A0A316U5N6
Rad52/22 double-strand break repair protein.
    
 0.834
SLX1
Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA.
   
 0.829
Your Current Organism:
Pseudomicrostroma glucosiphilum
NCBI taxonomy Id: 1684307
Other names: CBS 14053, MCA 4718, Microstromatales sp. MCA4718, NRRL 66310, P. glucosiphilum, Rhodotorula sp. MCA 4718
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