A0A316U0R3 protein (Pseudomicrostroma glucosiphilum)

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second shell of interactors

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a 3D structure is known or predicted

Edges:

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

A0A316U0R3

UV excision repair protein Rad23. (399 aa)

Predicted Functional Partners:

A0A316U2N2

0.997

A0A316TXJ3

0.990

A0A316TY80

0.990

A0A316U8F6

0.989

A0A316U4Q4

0.972

A0A316UH08

0.972

A0A316U034

0.969

A0A316UC48

0.962

A0A316U7R1

0.958

A0A316UG34

0.956

Your Current Organism:

Pseudomicrostroma glucosiphilum

NCBI taxonomy Id: 1684307
Other names: CBS 14053, MCA 4718, Microstromatales sp. MCA4718, NRRL 66310, P. glucosiphilum, Rhodotorula sp. MCA 4718

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A316TXJ3	A0A316TY80	Putative YEF3-translation elongation factor eEF3.	Uncharacterized protein.	0.997
A0A316TXJ3	A0A316U0R3	Putative YEF3-translation elongation factor eEF3.	UV excision repair protein Rad23.	0.990
A0A316TXJ3	A0A316U4Q4	Putative YEF3-translation elongation factor eEF3.	RRN7-type domain-containing protein.	0.990
A0A316TXJ3	A0A316U7R1	Putative YEF3-translation elongation factor eEF3.	Putative RPT1-26S proteasome regulatory subunit; Belongs to the AAA ATPase family.	0.475
A0A316TXJ3	A0A316UC48	Putative YEF3-translation elongation factor eEF3.	Multidrug resistance protein.	0.871
A0A316TY80	A0A316TXJ3	Uncharacterized protein.	Putative YEF3-translation elongation factor eEF3.	0.997
A0A316TY80	A0A316U0R3	Uncharacterized protein.	UV excision repair protein Rad23.	0.990
A0A316TY80	A0A316U4Q4	Uncharacterized protein.	RRN7-type domain-containing protein.	0.990
A0A316TY80	A0A316U7R1	Uncharacterized protein.	Putative RPT1-26S proteasome regulatory subunit; Belongs to the AAA ATPase family.	0.454
A0A316TY80	A0A316UC48	Uncharacterized protein.	Multidrug resistance protein.	0.899
A0A316U034	A0A316U0R3	U-box domain-containing protein.	UV excision repair protein Rad23.	0.969
A0A316U034	A0A316U2N2	U-box domain-containing protein.	Rad4-domain-containing protein.	0.441
A0A316U034	A0A316U4Q4	U-box domain-containing protein.	RRN7-type domain-containing protein.	0.559
A0A316U034	A0A316U8F6	U-box domain-containing protein.	VWFA domain-containing protein.	0.660
A0A316U0R3	A0A316TXJ3	UV excision repair protein Rad23.	Putative YEF3-translation elongation factor eEF3.	0.990
A0A316U0R3	A0A316TY80	UV excision repair protein Rad23.	Uncharacterized protein.	0.990
A0A316U0R3	A0A316U034	UV excision repair protein Rad23.	U-box domain-containing protein.	0.969
A0A316U0R3	A0A316U2N2	UV excision repair protein Rad23.	Rad4-domain-containing protein.	0.997
A0A316U0R3	A0A316U4Q4	UV excision repair protein Rad23.	RRN7-type domain-containing protein.	0.972
A0A316U0R3	A0A316U7R1	UV excision repair protein Rad23.	Putative RPT1-26S proteasome regulatory subunit; Belongs to the AAA ATPase family.	0.958

page 1 of 4

Network Stats

number of nodes:

11

number of edges:

28

average node degree:

5.09

avg. local clustering coefficient:

0.819

expected number of edges:

11

PPI enrichment p-value:

1.52e-05

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

10 of 115

1.52

2.95

5.62e-12

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

10 of 52

1.86

4.93

1.91e-15

GO:0019843

rRNA binding

7 of 40

1.82

3.46

1.08e-09

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

10 of 58

1.81

4.77

9.37e-16

GO:0044391

Ribosomal subunit

4 of 15

2.0

2.67

2.10e-06

GO:0015934

Large ribosomal subunit

3 of 8

2.15

2.25

3.51e-05

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:36090071

(2022) Characterization and genomic analysis of two novel psychrotolerant Acidithiobacillus ferrooxidans strains from polar and subpolar environments.

5 of 31

1.78

2.58

6.98e-07

PMID:34412707

(2021) The metabolic footprint of Clostridia and Erysipelotrichia reveals their role in depleting sugar alcohols in the cecum.

2 of 11

1.84

1.01

0.0105

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:235

Large ribosomal subunit, and Structural constituent of ribosome

9 of 17

2.3

7.23

3.54e-17

CL:229

rRNA-binding, and Elongation Factor G, domain II

10 of 30

2.1

6.5

1.85e-17

CL:226

Structural constituent of ribosome, and Translation regulator activity

11 of 64

1.81

5.06

1.85e-17

CL:256

Mixed, incl. Large ribosomal subunit, and KOW (Kyprides, Ouzounis, Woese) motif.

5 of 6

2.5

4.6

9.61e-10

CL:237

Mixed, incl. Large ribosomal subunit, and KOW

3 of 7

2.21

2.13

7.26e-05

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03010

Ribosome

10 of 58

1.81

4.77

9.60e-16

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

7 of 42

1.8

3.35

1.84e-09

GOCC:0015934

Large ribosomal subunit

4 of 9

2.22

3.05

7.63e-07

GOCC:0044391

Ribosomal subunit

5 of 22

1.93

2.94

2.50e-07

GOCC:0022626

Cytosolic ribosome

4 of 19

1.9

2.37

7.25e-06

GOCC:0022625

Cytosolic large ribosomal subunit

3 of 6

2.28

2.32

3.27e-05

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

9 of 50

1.83

4.42

1.47e-13

KW-0699

rRNA-binding

7 of 38

1.84

3.69

2.52e-10

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00739

KOW (Kyprides, Ouzounis, Woese) motif.

2 of 3

2.4

1.15

0.0077

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