STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A316U2B7WD40 repeat-like protein. (742 aa)    
Predicted Functional Partners:
A0A316U635
CPSF_A domain-containing protein.
    
 0.954
A0A316UA66
Cullin-domain-containing protein; Belongs to the cullin family.
    
 0.919
A0A316U919
JAB_MPN domain-containing protein.
    
 0.809
A0A316UAJ0
WD40 repeat-like protein.
    
 0.801
A0A316U1T6
Nsp1_C domain-containing protein.
    
 0.789
A0A316U6Z7
Putative COP9 signalosome complex subunit 2.
    
 0.767
A0A316U649
Uncharacterized protein.
    
  0.766
A0A316U8N3
RING/U-box.
    
 0.746
A0A316UG52
Putative NEDD8-ubiquitin-like protein.
    
  0.739
A0A316UCE0
Uncharacterized protein.
    
  0.738
Your Current Organism:
Pseudomicrostroma glucosiphilum
NCBI taxonomy Id: 1684307
Other names: CBS 14053, MCA 4718, Microstromatales sp. MCA4718, NRRL 66310, P. glucosiphilum, Rhodotorula sp. MCA 4718
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.