STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A316U9B1BHLH domain-containing protein. (887 aa)    
Predicted Functional Partners:
A0A316U8B2
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
    
  0.834
A0A316UJG9
Putative NTF2-nuclear transport factor.
    
 0.825
A0A316U2L4
BZIP domain-containing protein.
    
 0.652
A0A316UBA7
LAG1-DNAbind-domain-containing protein.
    
 0.641
A0A316UHI7
Uncharacterized protein.
    
 0.641
A0A316U280
Terpenoid cyclases/Protein prenyltransferase.
    
 
 0.576
A0A316UA62
Putative glycogen synthase kinase 3 alpha.
    
 
 0.559
A0A316U9Q1
tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...]
    
 
 0.442
A0A316U6I2
Putative UBC5-E2 ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.428
A0A316UAQ5
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
  0.428
Your Current Organism:
Pseudomicrostroma glucosiphilum
NCBI taxonomy Id: 1684307
Other names: CBS 14053, MCA 4718, Microstromatales sp. MCA4718, NRRL 66310, P. glucosiphilum, Rhodotorula sp. MCA 4718
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