STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A316UA40Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family. (2051 aa)    
Predicted Functional Partners:
A0A316UH97
Putative SEC24-COPII coated vesicle component.
   
 0.968
A0A316UD83
Protein transporter SEC13; Belongs to the WD repeat SEC13 family.
    
 0.959
A0A316UA16
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.953
A0A316U815
Uncharacterized protein.
   
 0.946
A0A316TZI5
WD_REPEATS_REGION domain-containing protein.
   
 0.876
A0A316U9W9
Uncharacterized protein.
   
 0.876
A0A316UBI2
Putative GTP-binding protein SAR1; Belongs to the small GTPase superfamily. SAR1 family.
    
 0.876
A0A316UCF9
Kinase-like protein; Belongs to the protein kinase superfamily.
    
 
 0.805
A0A316U0H1
Uncharacterized protein.
    
 0.781
A0A316UAC5
CDC73-domain-containing protein.
    
 0.771
Your Current Organism:
Pseudomicrostroma glucosiphilum
NCBI taxonomy Id: 1684307
Other names: CBS 14053, MCA 4718, Microstromatales sp. MCA4718, NRRL 66310, P. glucosiphilum, Rhodotorula sp. MCA 4718
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