STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A316UCB5Splicing factor, CC1-like protein. (554 aa)    
Predicted Functional Partners:
A0A316U9Q8
Uncharacterized protein.
   
 
 0.952
A0A316UJD3
Uncharacterized protein.
   
 0.916
A0A316UEA3
Ceramide very long chain fatty acid hydroxylase; Ceramide hydroxylase involved in the hydroxylation of sphingolipid-associated very long chain fatty acids. Postulated to hydroxylate the very long chain fatty acid of dihydroceramides and phytoceramides at C-2; Belongs to the sterol desaturase family. SCS7 subfamily.
 
      0.827
A0A316U8M6
Putative splicing factor 3b subunit 1.
   
 
 0.824
A0A316U808
Uncharacterized protein.
   
 
0.807
A0A316UA87
Kinase-like protein.
    
 
 0.796
A0A316U635
CPSF_A domain-containing protein.
    
 
 0.751
A0A316UCN1
KH domain-containing protein.
   
 0.748
A0A316UG71
Cwf21 domain-containing protein.
   
 0.747
A0A316UDX3
PWI domain-containing protein.
   
 0.746
Your Current Organism:
Pseudomicrostroma glucosiphilum
NCBI taxonomy Id: 1684307
Other names: CBS 14053, MCA 4718, Microstromatales sp. MCA4718, NRRL 66310, P. glucosiphilum, Rhodotorula sp. MCA 4718
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