STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A316UDZ9Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (124 aa)    
Predicted Functional Partners:
A0A316U2Q1
Putative small nuclear ribonucleo protein F.
   
 0.999
A0A316U9R4
Small nuclear ribonucleoprotein G.
   
 0.999
A0A316U9X3
Small nuclear ribonucleoprotein Sm D3.
   
 0.999
A0A316UFP2
Small nuclear ribonucleoprotein Sm D2.
   
 0.999
A0A316UFU9
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.999
A0A316UFC9
Sm-like ribonucleo protein.
   
 0.998
A0A316U1N3
RNA-binding domain-containing protein.
   
 0.995
A0A316UFC1
Putative ribosomal elongation factor EF-2.
   
 0.995
A0A316U0R0
L domain-like protein.
   
 0.994
A0A316TY77
Uncharacterized protein.
    
 0.993
Your Current Organism:
Pseudomicrostroma glucosiphilum
NCBI taxonomy Id: 1684307
Other names: CBS 14053, MCA 4718, Microstromatales sp. MCA4718, NRRL 66310, P. glucosiphilum, Rhodotorula sp. MCA 4718
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