STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A316UFK5RED_N domain-containing protein. (569 aa)    
Predicted Functional Partners:
A0A316U6A6
Putative pre-mRNA splicing factor prp1.
   
 0.945
A0A316UAJ2
CCHC-type domain-containing protein.
   
  0.939
A0A316U7S5
PRP38-domain-containing protein.
   
 0.889
A0A316UFC1
Putative ribosomal elongation factor EF-2.
    
 
 0.839
A0A316UD35
Matrin-type domain-containing protein.
   
  0.822
A0A316UGU1
U1-type domain-containing protein.
    
  0.818
A0A316U4N1
CPSF_A domain-containing protein.
    
   0.764
A0A316UF01
Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.
    
  0.729
A0A316UJU3
Uncharacterized protein.
    
  0.729
A0A316U0Q1
WD40 repeat-like protein.
    
 
 0.690
Your Current Organism:
Pseudomicrostroma glucosiphilum
NCBI taxonomy Id: 1684307
Other names: CBS 14053, MCA 4718, Microstromatales sp. MCA4718, NRRL 66310, P. glucosiphilum, Rhodotorula sp. MCA 4718
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.