A0A316UGM3 protein (Pseudomicrostroma glucosiphilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A316UGM3

Uncharacterized protein. (291 aa)

Predicted Functional Partners:

A0A316U8K7

0.682

A0A316UGA5

0.612

A0A316U581

0.590

A0A316U933

0.590

A0A316UB60

0.587

A0A316UB76

0.530

A0A316UEV0

0.530

A0A316U3H2

0.519

A0A316TZY8

0.509

A0A316U2N7

0.509

Your Current Organism:

Pseudomicrostroma glucosiphilum

NCBI taxonomy Id: 1684307
Other names: CBS 14053, MCA 4718, Microstromatales sp. MCA4718, NRRL 66310, P. glucosiphilum, Rhodotorula sp. MCA 4718

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A316TZY8	A0A316U2N7	Ras-domain-containing protein.	Uncharacterized protein.	0.698
A0A316TZY8	A0A316U581	Ras-domain-containing protein.	Cell division control protein 42.	0.768
A0A316TZY8	A0A316U8K7	Ras-domain-containing protein.	Uncharacterized protein; Belongs to the OSBP family.	0.553
A0A316TZY8	A0A316U933	Ras-domain-containing protein.	Uncharacterized protein.	0.769
A0A316TZY8	A0A316UB60	Ras-domain-containing protein.	Ras-domain-containing protein.	0.650
A0A316TZY8	A0A316UB76	Ras-domain-containing protein.	Putative SEC4-like Rab/GTPase.	0.658
A0A316TZY8	A0A316UEV0	Ras-domain-containing protein.	NCA2-domain-containing protein.	0.658
A0A316TZY8	A0A316UGA5	Ras-domain-containing protein.	NIPSNAP-domain-containing protein.	0.538
A0A316TZY8	A0A316UGM3	Ras-domain-containing protein.	Uncharacterized protein.	0.509
A0A316U2N7	A0A316TZY8	Uncharacterized protein.	Ras-domain-containing protein.	0.698
A0A316U2N7	A0A316U581	Uncharacterized protein.	Cell division control protein 42.	0.768
A0A316U2N7	A0A316U8K7	Uncharacterized protein.	Uncharacterized protein; Belongs to the OSBP family.	0.553
A0A316U2N7	A0A316U933	Uncharacterized protein.	Uncharacterized protein.	0.767
A0A316U2N7	A0A316UB60	Uncharacterized protein.	Ras-domain-containing protein.	0.672
A0A316U2N7	A0A316UB76	Uncharacterized protein.	Putative SEC4-like Rab/GTPase.	0.700
A0A316U2N7	A0A316UEV0	Uncharacterized protein.	NCA2-domain-containing protein.	0.666
A0A316U2N7	A0A316UGA5	Uncharacterized protein.	NIPSNAP-domain-containing protein.	0.538
A0A316U2N7	A0A316UGM3	Uncharacterized protein.	Uncharacterized protein.	0.509
A0A316U3H2	A0A316U8K7	SSD domain-containing protein.	Uncharacterized protein; Belongs to the OSBP family.	0.422
A0A316U3H2	A0A316UGM3	SSD domain-containing protein.	Uncharacterized protein.	0.519