Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
RY69_1022ABC transporter, ATP-binding protein. (282 aa)    
Predicted Functional Partners:
RY69_1371
ATP binding protein of ABC transporter.
  
     0.694
RY69_1331
ATP binding protein of ABC transporter.
  
     0.660
RY69_493
ATPase, AAA family; Belongs to the AAA ATPase family.
  
     0.608
RY69_1021
Cof-like hydrolase.
  
    0.599
RY69_1024
Hypothetical protein.
       0.535
RY69_993
Methyltransferase domain protein; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.
 
     0.502
glgA
Starch synthase.
       0.465
arc
AAA ATPase forming ring-shaped complexes.
  
     0.449
RY69_2171
Glutamine amidotransferases class-II.
  
     0.444
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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