Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RY69_1066 | RY69_1068 | RY69_1066 | RY69_1068 | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Hypothetical protein. | 0.702 |
RY69_1066 | RY69_1069 | RY69_1066 | RY69_1069 | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Secreted protein. | 0.702 |
RY69_1066 | RY69_1070 | RY69_1066 | RY69_1070 | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. | 0.619 |
RY69_1066 | alaS | RY69_1066 | RY69_1067 | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Alanine-tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.955 |
RY69_1066 | mltG | RY69_1066 | RY69_1065 | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | YceG family protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.841 |
RY69_1068 | RY69_1066 | RY69_1068 | RY69_1066 | Hypothetical protein. | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.702 |
RY69_1068 | RY69_1069 | RY69_1068 | RY69_1069 | Hypothetical protein. | Secreted protein. | 0.844 |
RY69_1068 | RY69_1070 | RY69_1068 | RY69_1070 | Hypothetical protein. | Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. | 0.713 |
RY69_1068 | alaS | RY69_1068 | RY69_1067 | Hypothetical protein. | Alanine-tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.702 |
RY69_1068 | mltG | RY69_1068 | RY69_1065 | Hypothetical protein. | YceG family protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.695 |
RY69_1069 | RY69_1066 | RY69_1069 | RY69_1066 | Secreted protein. | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.702 |
RY69_1069 | RY69_1068 | RY69_1069 | RY69_1068 | Secreted protein. | Hypothetical protein. | 0.844 |
RY69_1069 | RY69_1070 | RY69_1069 | RY69_1070 | Secreted protein. | Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. | 0.713 |
RY69_1069 | alaS | RY69_1069 | RY69_1067 | Secreted protein. | Alanine-tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.702 |
RY69_1069 | mltG | RY69_1069 | RY69_1065 | Secreted protein. | YceG family protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.733 |
RY69_1069 | rpsD | RY69_1069 | RY69_1095 | Secreted protein. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.588 |
RY69_1070 | RY69_1066 | RY69_1070 | RY69_1066 | Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.619 |
RY69_1070 | RY69_1068 | RY69_1070 | RY69_1068 | Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. | Hypothetical protein. | 0.713 |
RY69_1070 | RY69_1069 | RY69_1070 | RY69_1069 | Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. | Secreted protein. | 0.713 |
RY69_1070 | RY69_1071 | RY69_1070 | RY69_1071 | Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. | Integrase core domain protein. | 0.423 |
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