Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RY69_1097Efflux ABC transporter, permease protein. (405 aa)    
Predicted Functional Partners:
RY69_1096
Macrolide-specific ABC-type efflux carrier MacB.
 
   0.941
RY69_1098
Hypothetical protein.
 
    0.923
RY69_1839
Putative membrane protein.
 
    0.791
RY69_1836
ABC transporter, ATP-binding protein.
 
 
 0.776
RY69_1840
Putative pathogen-specific surface antigen.
 
     0.766
RY69_1838
Permease domain protein.
  
     0.764
RY69_1841
Iron permease FTR1 domain protein.
 
     0.762
RY69_1837
Permease domain protein.
  
     0.752
RY69_228
ABC transporter ATP-binding component.
 
 
 0.568
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
    0.512
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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