Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
RY69_1105Hypothetical protein. (310 aa)    
Predicted Functional Partners:
RY69_1348
Putative ATP-binding protein.
  
     0.693
RY69_2052
Putative integral membrane protein.
  
     0.671
RY69_460
YbaK/prolyl-tRNA synthetase associated region.
 
     0.663
RY69_1106
Pyrazinamidase/Nicotinamidase.
       0.513
RY69_1278
Glycosyl hydrolase family 3, N-terminal domain protein.
 
   
 0.490
RY69_1528
Transglutaminase-like protein.
 
     0.476
dapE
Succinyl-diaminopimelate desuccinylase.
 
     0.475
RY69_2090
Lipopolysaccharide kinase.
 
     0.473
RY69_42
Transcriptional regulator.
  
     0.443
RY69_201
Histidine kinase sensor of two component system.
  
     0.442
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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