STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_1111Putative extracellular lysophospholipase. (84 aa)    
Predicted Functional Partners:
RY69_1110
Clavaspirin.
       0.773
RY69_1391
Transposase.
  
 
 0.679
RY69_445
Hypothetical protein.
  
 
 0.679
RY69_391
Beta-1,3-exoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
 
 0.543
RY69_829
Lipoprotein releasing system, ATP-binding protein LolD.
   
   0.516
RY69_1732
3-hydroxy-3-methylglutaryl CoA synthase.
  
   0.512
RY69_1112
Putative DNA-binding protein.
       0.509
RY69_1109
Hypothetical protein.
       0.450
RY69_1108
Hypothetical protein.
       0.446
RY69_1168
Efflux ABC transporter, permease protein.
   
   0.439
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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