Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RY69_113Putative ABC transporter, substrate-binding protein. (431 aa)    
Predicted Functional Partners:
RY69_114
Transmembrane permease MsmF.
 
   0.961
RY69_115
Sn-glycerol-3-phosphate-binding protein.
 
 
 0.951
RY69_2089
Sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.881
RY69_1922
Maltodextrin transport system permease protein malC.
 
  0.740
RY69_2231
ABC transporter, permease domain protein.
 
 
 0.711
RY69_116
Glycoside hydrolase, family 1; Belongs to the glycosyl hydrolase 1 family.
 
    0.709
RY69_693
ABC transporter, permease protein.
 
 
 0.692
RY69_692
Transmembrane permease MsmF.
 
 
 0.654
RY69_1609
Multiple sugar transport system permease protein.
 
   0.648
RY69_691
ABC transporter, solute-binding protein.
  
  
 
0.645
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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