Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RY69_114Transmembrane permease MsmF. (305 aa)    
Predicted Functional Partners:
RY69_115
Sn-glycerol-3-phosphate-binding protein.
 
   0.970
RY69_113
Putative ABC transporter, substrate-binding protein.
 
   0.961
RY69_2089
Sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.886
RY69_1383
ABC transporter, permease protein.
 
   0.867
RY69_2161
Binding-protein-dependent transport systems inner membrane component.
 
   0.867
RY69_693
ABC transporter, permease protein.
 
   0.867
RY69_1680
ABC transporter, permease protein.
 
   0.858
RY69_195
ABC transporter, permease protein.
 
   0.856
RY69_1498
Permease protein of ABC transporter system for sugars.
 
   0.815
RY69_2231
ABC transporter, permease domain protein.
 
   0.808
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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