Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RY69_1234Response regulator receiver domain protein. (262 aa)    
Predicted Functional Partners:
RY69_1262
Sensor histidine kinase.
 
   
 0.780
RY69_342
Solute binding protein of ABC transporter.
  
 
 0.765
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.746
RY69_1232
Putative NIF3 family protein.
       0.602
RY69_1236
Hydrolase, NUDIX family.
       0.568
RY69_1231
Hydrolase, NUDIX family.
       0.565
rpsA
30S ribosomal protein S1.
  
    0.559
RY69_216
Sensor-like histidine kinase senX3.
  
     0.546
glgX
Glycogen debranching enzyme GlgX; Belongs to the glycosyl hydrolase 13 family.
       0.520
RY69_80
Phosphate regulon sensor protein PhoR.
  
  
 0.482
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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