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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_1252Phosphoribosyl transferase domain protein. (231 aa)    
Predicted Functional Partners:
RY69_1253
HAD-superfamily hydrolase subfamily IIB.
       0.770
RY69_597
Tyrosine recombinase XerC.
   
    0.768
RY69_595
Prephenate dehydrogenase.
   
  
 0.749
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.724
RY69_2186
ABC superfamily ATP binding cassette transporter ABC protein.
   
    0.708
RY69_1175
Smf protein.
 
 
 0.643
RY69_709
ComE operon protein 3.
 
  
 0.595
RY69_1254
Hypothetical protein.
 
     0.583
RY69_1786
Monoamine oxidase.
  
    0.559
RY69_2002
Putative cyclic diguanylate phosphodiesterase domain protein.
  
  
 0.530
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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