Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RY69_1259Transcriptional regulator. (330 aa)    
Predicted Functional Partners:
RY69_2114
Transcriptional regulator, Sir2 family.
  
    0.684
RY69_2178
Transcriptional regulator, LytR family.
 
   
0.684
RY69_1260
FtsK/SpoIIIE family protein.
  
  
 0.627
RY69_1258
Type IV pilus protein.
       0.564
RY69_1868
Transglycosylase.
  
   
 0.545
whiB-2
Transcription factor, WhiB family; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
       0.536
RY69_2088
UbiC transcription regulator-associated domain protein.
  
  
 0.527
RY69_348
Undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase.
 
  
 0.524
RY69_429
Putative membrane protein.
  
   
 0.482
RY69_1556
Putative cell surface polysaccharide biosynthesis / Chain length determinant protein.
  
  
 0.429
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.