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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_1259Transcriptional regulator. (330 aa)    
Predicted Functional Partners:
RY69_2178
Transcriptional regulator, LytR family.
 
   
0.723
RY69_2114
Transcriptional regulator, Sir2 family.
  
    0.711
RY69_1260
FtsK/SpoIIIE family protein.
  
  
 0.662
whiB-2
Transcription factor, WhiB family; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
       0.571
RY69_1258
Type IV pilus protein.
       0.564
RY69_1868
Transglycosylase.
  
    0.560
RY69_348
Undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase.
 
  
 0.520
RY69_2088
UbiC transcription regulator-associated domain protein.
  
  
 0.509
RY69_429
Putative membrane protein.
  
  
 0.495
RY69_2072
Hypothetical protein.
  
   
 0.438
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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