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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_1260FtsK/SpoIIIE family protein. (572 aa)    
Predicted Functional Partners:
RY69_444
Type VII secretion target protein; Belongs to the WXG100 family.
 
 
 0.986
whiB-2
Transcription factor, WhiB family; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
       0.686
RY69_1259
Transcriptional regulator.
  
  
 0.662
RY69_552
POTRA domain, FtsQ-type superfamily.
   
 
 0.608
RY69_1256
Putative membrane protein.
 
     0.559
RY69_2065
Stage 0 sporulation protein J; Belongs to the ParB family.
  
  
 0.533
RY69_2181
Glycosyl hydrolase family 25.
 
 
 0.533
RY69_1669
Putative von Willebrand factor type A domain protein.
   
 
 0.512
RY69_1736
Phage major tail protein.
   
 
 0.512
RY69_1928
Cell surface protein with Cna protein B-type domain and Gram-positive cocci surface proteins LPxTG motif profile.
  
 
 0.511
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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