Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RY69_1300Putative HD domain protein. (177 aa)    
Predicted Functional Partners:
RY69_1299
Transporter.
 
     0.928
RY69_1296
Haloacid dehalogenase-like hydrolase (HAD superfamily).
  
  
 0.601
tyrS
Tyrosine-tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
  
    0.598
RY69_1297
Hypothetical protein.
  
    0.533
RY69_1294
Hemolysin-like protein with S4 and FtsJ-like methyltransferase domains.
       0.517
RY69_477
CRS1 / YhbY domain protein.
  
   
 0.509
RY69_1831
Putative membrane protein.
 
     0.482
RY69_1295
Hypothetical protein.
       0.451
RY69_1301
Rhodanese-like protein.
  
    0.451
RY69_385
Putative CoA-substrate-specific enzyme activase.
 
     0.405
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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