Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RY69_1348Putative ATP-binding protein. (74 aa)    
Predicted Functional Partners:
RY69_1347
Phosphotransferase enzyme domain protein.
 
     0.732
RY69_1105
Hypothetical protein.
  
     0.693
RY69_1797
Orotate phosphoribosyltransferase.
  
     0.669
RY69_2090
Lipopolysaccharide kinase.
  
     0.651
RY69_1346
Putative DNA helicase II.
       0.580
RY69_1271
Septum formation initiator family protein.
  
     0.528
RY69_2233
Hypothetical protein.
  
     0.528
RY69_2052
Putative integral membrane protein.
  
     0.519
RY69_313
Putative membrane protein.
  
     0.495
hisS
Histidine-tRNA ligase.
  
     0.473
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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