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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_1503L-cystine ABC transporter, ATP-binding protein. (276 aa)    
Predicted Functional Partners:
RY69_1504
Permease protein of ABC transporter system.
 0.999
RY69_464
Glutamate transport system permease protein gluD.
 
 0.936
RY69_463
Glutamate transport system permease protein GluC.
 
 
 0.935
RY69_1505
ABC-type amino acid transport system, secreted component.
 
 
 0.920
RY69_1160
ABC transporter, permease protein.
 
 0.894
RY69_1161
Amino acid ABC transporter, permease protein.
 
 
 0.863
RY69_1507
Solute-binding protein of ABC transporter system.
 
 
 0.857
RY69_462
ABC transporter glutamine-binding protein GlnH; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.800
RY69_706
Putative solute binding protein of ABC transporter system.
 
 
 0.746
RY69_2137
ABC transporter transmembrane region.
 
     
0.661
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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