Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
RY69_1521Transporter, major facilitator family protein. (439 aa)    
Predicted Functional Partners:
RY69_429
Putative membrane protein.
  
   
 0.719
RY69_1523
ATP-dependent DNA helicase, UvrD/REP family.
 
     0.695
RY69_1522
UvrD/REP helicase family protein; Belongs to the helicase family. UvrD subfamily.
 
     0.685
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
       0.680
RY69_1254
Hypothetical protein.
  
     0.662
RY69_2072
Hypothetical protein.
  
     0.661
RY69_179
Hypothetical protein.
  
     0.656
RY69_1256
Putative membrane protein.
  
     0.627
RY69_73
Hypothetical protein.
  
     0.620
RY69_525
Hypothetical protein.
 
     0.617
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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