Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RY69_1600Galactosyl transferase CpsD. (558 aa)    
Predicted Functional Partners:
RY69_1556
Putative cell surface polysaccharide biosynthesis / Chain length determinant protein.
 
  
 0.954
RY69_2183
RmlC/RmlD dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase.
 
  
 0.848
RY69_1575
Polysaccharide biosynthesis protein.
 
  
 0.760
RY69_2195
Polysaccharide pyruvyl transferase.
  
  
 0.618
RY69_1599
Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
  
 0.578
RY69_2207
Glycosyltransferase involved in cell wall biogenesis.
 
  
 0.576
RY69_2002
Putative cyclic diguanylate phosphodiesterase domain protein.
  
  
 0.513
RY69_1601
Hypothetical protein.
 
  
 0.487
RY69_1578
Capsular biosynthesis protein.
 
  
 0.484
RY69_1595
Capsular biosynthesis protein.
 
  
 0.471
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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