STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_1618Transcriptional regulator, LacI family. (371 aa)    
Predicted Functional Partners:
RY69_171
Periplasmic binding protein and sugar binding domain of the LacI protein.
  
     0.774
RY69_2158
Periplasmic binding protein and sugar binding domain of the LacI family protein.
  
     0.774
RY69_485
Periplasmic binding protein and sugar binding domain of the LacI family protein.
  
     0.774
RY69_1811
Transcriptional regulator.
  
     0.771
RY69_1862
Transcriptional regulator LacI family protein.
  
     0.755
RY69_1617
L-ribulose-5-phosphate 4-epimerase.
 
   
 0.666
rnhB
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.632
lepB
Putative signal peptidase I; Belongs to the peptidase S26 family.
  
    0.622
RY69_1028
Glutamate synthase [NADPH] large chain.
    
 
 0.560
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
    0.419
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.