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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_1682ABC transporter, solute-binding protein. (447 aa)    
Predicted Functional Partners:
RY69_1681
Permease of ABC transporter for sugars.
 
   0.929
RY69_1680
ABC transporter, permease protein.
 
 
 0.916
RY69_1609
Multiple sugar transport system permease protein.
 
   0.859
RY69_1498
Permease protein of ABC transporter system for sugars.
 
 
 0.854
RY69_1499
ABC transporter, permease protein.
 
   0.848
RY69_194
ABC transporter, permease protein.
 
   0.707
RY69_2089
Sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.659
RY69_1464
Transcriptional regulator, LacI family.
  
    0.658
RY69_195
ABC transporter, permease protein.
 
 
 0.624
RY69_393
Transcriptional regulator.
  
     0.619
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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