Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RY69_1795ATP-binding protein of ABC transporter system. (312 aa)    
Predicted Functional Partners:
RY69_1794
Permease protein of ABC transporter system.
 
     0.906
RY69_1796
RNA methyltransferase, TrmH family.
  
    0.559
RY69_201
Histidine kinase sensor of two component system.
 
    0.477
RY69_818
LrgB family protein.
  
 
 0.456
RY69_1797
Orotate phosphoribosyltransferase.
       0.441
RY69_281
ABC transporter-like protein.
  
     0.438
RY69_972
ATP-binding protein of ABC transporter system.
 
   
 0.410
RY69_1798
RmuC domain protein.
       0.409
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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