STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_1841Iron permease FTR1 domain protein. (638 aa)    
Predicted Functional Partners:
RY69_1840
Putative pathogen-specific surface antigen.
 
  
 0.982
RY69_1839
Putative membrane protein.
 
  
 0.912
RY69_1838
Permease domain protein.
 
    0.890
RY69_1837
Permease domain protein.
 
    0.884
RY69_1836
ABC transporter, ATP-binding protein.
 
    0.844
RY69_1097
Efflux ABC transporter, permease protein.
 
    0.787
RY69_1098
Hypothetical protein.
 
     0.610
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
      
 0.600
RY69_1835
FMN-binding domain protein.
 
     0.548
RY69_1096
Macrolide-specific ABC-type efflux carrier MacB.
 
    0.490
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.