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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_1879Oligopeptide transport ATP-binding protein OppD; Belongs to the binding-protein-dependent transport system permease family. (676 aa)    
Predicted Functional Partners:
RY69_1880
Glutathione transport system permease protein GsiC.
 
 0.999
RY69_1491
Peptide ABC transporter, permease protein.
 
 
 0.998
RY69_2149
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.998
RY69_599
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.998
RY69_1881
Bacterial extracellular solute-binding protein, family 5.
 
 
 0.975
RY69_1878
Oligopeptide ABC transporter, ATP-binding protein.
 
  
0.967
RY69_1877
Dihydrodipicolinate synthase family protein; Belongs to the DapA family.
 
   
 0.893
RY69_478
Cobalt transport protein.
 
  
0.858
RY69_2151
Glutathione ABC transporter, ATP-binding protein GsiA.
 
  
0.820
RY69_601
ATPase components of various ABC-type transport systems, containing duplicated ATPase; Belongs to the ABC transporter superfamily.
 
  
0.813
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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