Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RY69_2001Divergent AAA domain protein. (551 aa)    
Predicted Functional Partners:
RY69_1112
Putative DNA-binding protein.
  
  
  0.975
RY69_1890
DNA-binding protein.
  
  
 
0.929
RY69_66
ATP-dependent DNA helicase.
    
  0.900
RY69_244
Putative transcriptional regulator.
  
     0.731
RY69_505
Putative transcriptional regulator.
 
    0.593
RY69_649
HipA-like C-terminal domain protein.
 
     0.583
RY69_681
HipA-like C-terminal domain protein.
 
     0.583
RY69_671
Cell filamentation protein.
 
     0.582
RY69_1154
Filamentation induced by cAMP protein Fic.
 
     0.579
RY69_60
RelB antitoxin.
  
     0.502
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.