STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Coexpression
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[Homology]
Score
RY69_2002Putative cyclic diguanylate phosphodiesterase domain protein. (748 aa)    
Predicted Functional Partners:
RY69_1373
Diguanylate cyclase (GGDEF) domain protein.
 
  
 0.940
RY69_274
Integral membrane sensor signal transduction histidine kinase.
 
 
 0.767
RY69_2003
Hypothetical protein.
       0.752
RY69_1251
HAMP domain protein.
  
 
 0.737
RY69_80
Phosphate regulon sensor protein PhoR.
  
 
 0.737
RY69_1543
Transcriptional regulator, Crp/Fnr family.
 
  
 0.588
RY69_309
Glycosyl transferase domain, group 2 family protein.
  
  
 0.587
RY69_311
N-acetylglucosaminyltransferase.
  
  
 0.587
RY69_216
Sensor-like histidine kinase senX3.
     
 0.583
rpoD
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.554
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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