STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_2089Sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (375 aa)    
Predicted Functional Partners:
RY69_1921
Sugar ABC transporter, permease protein.
 
 0.994
RY69_1923
Putative sugar-binding secreted protein.
  
 0.987
RY69_2109
Binding-protein-dependent transport systems inner membrane component.
 
 0.980
RY69_2129
ABC transporter, permease protein.
 
 0.970
RY69_2110
Binding-protein-dependent transport systems inner membrane component.
 
 0.966
RY69_2130
Permease protein of ABC transporter system for sugars.
 
 0.962
RY69_1922
Maltodextrin transport system permease protein malC.
 
 0.959
RY69_1384
Sugar ABC transporter, permease protein.
 
 
 0.952
RY69_2160
ABC transporter, permease protein.
 
 
 0.948
RY69_692
Transmembrane permease MsmF.
 
 
 0.944
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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