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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_2172HD domain protein. (254 aa)    
Predicted Functional Partners:
RY69_1328
Putative tetratricopeptide repeat-containing domain protein.
 
 
   0.636
RY69_43
Hypothetical protein.
  
     0.582
RY69_777
Putative lipoprotein.
  
     0.557
RY69_1902
Flp pilus assembly protein.
  
     0.504
RY69_2068
Hypothetical protein.
  
     0.501
RY69_1215
Putative membrane protein.
  
     0.494
RY69_1523
ATP-dependent DNA helicase, UvrD/REP family.
 
   
 0.494
RY69_2171
Glutamine amidotransferases class-II.
 
     0.491
pheT
Phenylalanine-tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
  
 0.486
RY69_73
Hypothetical protein.
  
     0.486
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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