STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RY69_2174Permease protein of ABC transporter system. (486 aa)    
Predicted Functional Partners:
RY69_2173
ABC transporter, ATP-binding protein.
 
   0.937
RY69_228
ABC transporter ATP-binding component.
 
   0.842
RY69_229
Putative efflux ABC transporter, permease protein.
  
     0.774
RY69_1662
Transporter-like protein.
 
  
 0.717
RY69_1663
ABC transporter, ATP-binding protein Vexp2.
 
   0.606
RY69_1826
Putative beta-lactamase.
 
     0.561
RY69_377
Putative nucleoside deoxyribosyltransferase.
  
     0.489
RY69_2133
Macrolide-specific ABC-type efflux carrier MacB.
 
   0.479
RY69_1447
Glycolipid ABC exporter family, ATP-binding protein.
 
   0.470
RY69_1096
Macrolide-specific ABC-type efflux carrier MacB.
 
   0.468
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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