STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_2196Lipopolysaccharide biosynthesis protein. (631 aa)    
Predicted Functional Partners:
RY69_2197
Acyltransferase.
 
     0.958
RY69_2194
Glucosyl transferase GtrII.
 
     0.857
RY69_2198
Nucleoside-diphosphate-sugar epimerase family protein.
 
   
 0.773
RY69_2183
RmlC/RmlD dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase.
 
  
 0.731
RY69_1874
Sialidase A.
 
     0.653
RY69_2195
Polysaccharide pyruvyl transferase.
  
  
 0.649
RY69_1885
UDP-N-acetylglucosamine diphosphorylase.
  
     0.531
RY69_614
GTP-pyrophosphokinase.
   
    0.500
RY69_502
DivIVA protein.
  
     0.437
RY69_2068
Hypothetical protein.
  
     0.428
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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