STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_229Putative efflux ABC transporter, permease protein. (407 aa)    
Predicted Functional Partners:
RY69_228
ABC transporter ATP-binding component.
 
   0.966
RY69_230
Putative efflux ABC transporter, permease protein.
 
    
0.872
RY69_2174
Permease protein of ABC transporter system.
  
     0.774
RY69_1098
Hypothetical protein.
 
    0.703
RY69_2173
ABC transporter, ATP-binding protein.
 
   0.667
RY69_1663
ABC transporter, ATP-binding protein Vexp2.
 
   0.610
RY69_505
Putative transcriptional regulator.
  
     0.537
RY69_1677
Transcriptional regulator, TetR family.
 
    0.530
RY69_1096
Macrolide-specific ABC-type efflux carrier MacB.
 
   0.517
RY69_649
HipA-like C-terminal domain protein.
  
     0.490
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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