STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_236HTH-type transcriptional regulator LacR. (336 aa)    
Predicted Functional Partners:
gph
Transporter, major facilitator family protein.
 
   
 0.731
RY69_402
Periplasmic binding protein/LacI transcriptional regulator.
  
     0.729
RY69_1917
LacI-type transcriptional regulator.
  
     0.712
RY69_1607
Bacterial regulatory protein, LacI family.
  
     0.705
RY69_1930
LacI-type transcriptional regulator.
  
     0.703
RY69_485
Periplasmic binding protein and sugar binding domain of the LacI family protein.
  
     0.701
RY69_1938
LacI-type transcriptional regulator.
  
   
 0.697
RY69_357
Transcriptional regulator, LacI family.
  
     0.692
RY69_2032
Transcriptional regulator, LacI family.
  
     0.689
RY69_2018
Transcriptional regulator, LacI family.
  
     0.687
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.