STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_275Two component transcriptional regulator, winged helix family. (172 aa)    
Predicted Functional Partners:
RY69_274
Integral membrane sensor signal transduction histidine kinase.
 
 
 0.984
RY69_80
Phosphate regulon sensor protein PhoR.
 
 0.857
RY69_216
Sensor-like histidine kinase senX3.
 
 
 0.848
RY69_1251
HAMP domain protein.
 
 0.832
RY69_447
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein.
 
 
 0.803
RY69_1778
Transcriptional regulatory protein glnR.
  
     0.721
RY69_276
Hypothetical protein.
       0.553
RY69_2002
Putative cyclic diguanylate phosphodiesterase domain protein.
 
  
 0.424
clpX
ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
  
 
 0.403
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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