STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_280Peptidoglycan-binding domain 1 protein. (350 aa)    
Predicted Functional Partners:
RY69_281
ABC transporter-like protein.
 
    0.804
RY69_282
Hypothetical protein.
  
    0.778
RY69_279
Hypothetical protein.
       0.709
RY69_1337
Alpha/beta hydrolase family protein.
  
     0.670
RY69_204
Putative membrane protein.
  
     0.652
RY69_2
Transposase.
 
     0.529
RY69_3
Transposase.
 
     0.529
RY69_1617
L-ribulose-5-phosphate 4-epimerase.
  
     0.499
RY69_278
Hypothetical protein.
       0.497
RY69_19
Putative efflux ABC transporter, permease protein.
  
     0.461
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.