rpmE protein (Bifidobacterium breve) - STRING interaction network

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Score

rpmE

50S ribosomal protein L31; Binds the 23S rRNA. (70 aa)

Predicted Functional Partners:

rplS

0.998

rpsP

0.998

rpsO

0.998

rpmG

0.997

RY69_161

0.997

rpmB

0.997

rpsT

0.996

rplM

0.996

rplU

0.996

rpmA

0.996

Your Current Organism:

Bifidobacterium breve

NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RY69_161	rplM	RY69_161	RY69_122	50S ribosomal protein L36.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.998
RY69_161	rplS	RY69_161	RY69_1621	50S ribosomal protein L36.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.995
RY69_161	rplU	RY69_161	RY69_30	50S ribosomal protein L36.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.998
RY69_161	rpmA	RY69_161	RY69_31	50S ribosomal protein L36.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.995
RY69_161	rpmB	RY69_161	RY69_65	50S ribosomal protein L36.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.997
RY69_161	rpmE	RY69_161	RY69_338	50S ribosomal protein L36.	50S ribosomal protein L31; Binds the 23S rRNA.	0.997
RY69_161	rpmG	RY69_161	RY69_102	50S ribosomal protein L36.	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.997
RY69_161	rpsO	RY69_161	RY69_1665	50S ribosomal protein L36.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.994
RY69_161	rpsP	RY69_161	RY69_1651	50S ribosomal protein L36.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.996
RY69_161	rpsT	RY69_161	RY69_1034	50S ribosomal protein L36.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.991
rplM	RY69_161	RY69_122	RY69_161	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L36.	0.998
rplM	rplS	RY69_122	RY69_1621	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.999
rplM	rplU	RY69_122	RY69_30	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.999
rplM	rpmA	RY69_122	RY69_31	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.999
rplM	rpmB	RY69_122	RY69_65	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.998
rplM	rpmE	RY69_122	RY69_338	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L31; Binds the 23S rRNA.	0.996
rplM	rpmG	RY69_122	RY69_102	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.996
rplM	rpsO	RY69_122	RY69_1665	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999
rplM	rpsP	RY69_122	RY69_1651	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.998
rplM	rpsT	RY69_122	RY69_1034	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.998

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