STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_342Solute binding protein of ABC transporter. (395 aa)    
Predicted Functional Partners:
RY69_344
Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.999
RY69_343
High-affinity branched-chain amino acid ABC transporter, permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.997
RY69_345
High affinity branched-chain amino acid ABC transporter, ATP-binding protein.
 
 
 0.997
RY69_346
High affinity branched-chain amino acid ABC transporter, ATP-binding protein.
 
 
 0.995
RY69_1234
Response regulator receiver domain protein.
  
 
 0.883
RY69_1028
Glutamate synthase [NADPH] large chain.
     
 0.695
RY69_341
Hypothetical protein.
       0.556
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
  
    0.480
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
    0.474
RY69_348
Undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase.
  
    0.437
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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