Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RY69_402Periplasmic binding protein/LacI transcriptional regulator. (341 aa)    
Predicted Functional Partners:
RY69_171
Periplasmic binding protein and sugar binding domain of the LacI protein.
  
     0.774
RY69_357
Transcriptional regulator, LacI family.
  
     0.774
RY69_1811
Transcriptional regulator.
  
     0.769
RY69_236
HTH-type transcriptional regulator LacR.
  
     0.729
RY69_1028
Glutamate synthase [NADPH] large chain.
    
 
 0.560
RY69_399
Transcriptional regulator.
  
    0.484
RY69_400
ABC transporter, permease/ATP-binding protein.
       0.475
RY69_401
ABC transporter, permease/ATP-binding protein.
       0.475
RY69_403
Inosine-uridine preferring nucleoside.
       0.467
rbsK
Sugar kinase in PfkB family; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
    0.430
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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