Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RY69_418PRD domain protein. (497 aa)    
Predicted Functional Partners:
RY69_419
Phosphoenolpyruvate-dependent sugar PTS family porter, EIIA 2.
 
  
 0.915
RY69_420
PTS system, IIA component.
 
  
 0.852
RY69_422
PTS family porter, EIIC.
 
  
 0.802
RY69_2085
PTS system, IIA component.
 
  
 0.773
RY69_421
Phosphotransferase system, fructose-specific IIBC component.
 
  
 0.772
RY69_2087
PTS system, IIC component.
 
  
 0.767
RY69_2086
PTS system, IIB component, lactose/cellobiose family.
 
   
 0.737
RY69_423
D-allulose-6-phosphate 3-epimerase.
 
     0.703
ptbA
PTS system glucose-specific EIICBA component.
  
 
 0.540
RY69_11
PTS system maltose-and glucose-specific EIICB component.
  
 
 0.540
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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