STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_438Hypothetical protein. (314 aa)    
Predicted Functional Partners:
RY69_439
ATPase, AAA family.
 
  
 0.967
RY69_435
Putative von Willebrand factor type A domain protein.
 
   
 0.956
RY69_436
Von Willebrand factor type A domain.
 
   
 0.953
RY69_434
Hypothetical protein.
       0.822
RY69_437
Hypothetical protein.
       0.822
ung
Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
       0.727
RY69_1526
ATPase, AAA family.
 
     0.610
RY69_432
PGAP1-like domain protein.
 
     0.510
RY69_1328
Putative tetratricopeptide repeat-containing domain protein.
 
  
 0.503
RY69_441
Hypothetical protein.
       0.503
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.