Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RY69_446DNA-binding response regulator PhoP. (243 aa)    
Predicted Functional Partners:
RY69_447
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein.
 
 
 0.948
RY69_1251
HAMP domain protein.
 
 0.869
RY69_274
Integral membrane sensor signal transduction histidine kinase.
 
 
 0.867
RY69_80
Phosphate regulon sensor protein PhoR.
 
 0.862
RY69_216
Sensor-like histidine kinase senX3.
 
 
 0.842
RY69_445
Hypothetical protein.
  
  
 0.791
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.605
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.605
RY69_444
Type VII secretion target protein; Belongs to the WXG100 family.
     
 0.603
RY69_448
Cold-shock domain protein.
     
 0.603
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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