STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_469DEAD/DEAH box helicase. (856 aa)    
Predicted Functional Partners:
RY69_470
Replication-associated recombination protein A.
       0.694
recQ
ATP-dependent DNA helicase RecQ.
     
 0.604
RY69_468
Polyphosphate:nucleotide phosphotransferase, PPK2 family.
       0.542
RY69_471
Response regulator of two-component system.
       0.537
RY69_699
Hypothetical protein.
 
     0.528
RY69_1077
Integrase core domain.
      
 0.499
RY69_1675
Methylated-DNA-protein-cysteine methyltransferase.
      
 0.499
RY69_1750
HNH nuclease.
      
 0.499
RY69_375
Endonuclease/exonuclease/phosphatase family protein.
 
     0.498
RY69_258
ABC transporter-like protein.
  
     0.484
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.