STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RY69_518Alpha-1,3/4-fucosidase, putative. (478 aa)    
Predicted Functional Partners:
RY69_519
Putative alpha-L-fucosidase 2.
 
    0.934
RY69_517
RbsD or FucU transport.
       0.734
RY69_514
KR domain protein.
 
   
 0.635
RY69_697
Hypothetical protein.
 
   
 0.594
RY69_232
Glycosyl hydrolase family 20, catalytic domain protein.
 
  
 0.582
RY69_197
Phosphotransferase family.
  
    0.503
RY69_515
Amidohydrolase 2.
 
     0.495
RY69_2020
Hypothetical protein.
 
   
 0.441
RY69_23
Oxidoreductase, short chain dehydrogenase/reductase family.
  
   
 0.434
RY69_2048
Beta-galactosidase.
 
   
 0.415
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.