STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_519Putative alpha-L-fucosidase 2. (783 aa)    
Predicted Functional Partners:
RY69_518
Alpha-1,3/4-fucosidase, putative.
    0.934
RY69_2162
Glycoside hydrolase, family 43.
 
   
 0.766
RY69_517
RbsD or FucU transport.
  
    0.692
RY69_514
KR domain protein.
 
   
 0.584
RY69_515
Amidohydrolase 2.
 
     0.508
RY69_1260
FtsK/SpoIIIE family protein.
   
 
 0.500
RY69_618
FtsK/SpoIIIE family protein.
   
 
 0.500
RY69_697
Hypothetical protein.
  
     0.496
RY69_1394
Peptidase, S8/S53 family.
  
 
 0.466
RY69_2181
Glycosyl hydrolase family 25.
  
 
 0.466
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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