STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_597Tyrosine recombinase XerC. (355 aa)    
Predicted Functional Partners:
RY69_595
Prephenate dehydrogenase.
  
    0.814
RY69_774
Integrase/recombinse.
 
     0.770
RY69_1252
Phosphoribosyl transferase domain protein.
   
    0.768
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.749
RY69_1074
Site-specific recombinase, phage integrase family.
 
     0.743
RY69_1375
Site-specific recombinase, phage integrase family.
 
     0.740
RY69_596
Hypothetical protein.
       0.739
whiA
Putative sporulation transcription regulator WhiA; Involved in cell division and chromosome segregation.
  
    0.708
RY69_847
Hypothetical protein; Belongs to the SOS response-associated peptidase family.
   
    0.705
RY69_893
Phage integrase family protein.
  
     0.701
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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